rs52269074 SNP Detail

Summary

• ID
  rs52269074
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41491488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTAGGTAT GGTGATGACG GTCTGGCTTT TCGGAGAGCA
  AAAGGGAGAG AAAAAAGGAG AGACCATGAG CTGAACCAAG GACTGTGTAT GAGCTGAACC
  W
  ACAGAGGTGA GGAAAAAAAG AAAAGTTTTG TATGTGTCTG TGGTGTGTGT CTGTCTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61386158	NES16764747	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52269074					SNP	T	T	T	T	A	T	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386158	NES16764747	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41491488 () rs orientation: forward

Symbol	Name	Function Class
Gm28119	predicted gene 28119	1716 bp upstream
Gm51670	predicted gene, 51670	921 bp upstream
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Mir125b-1	microRNA 125b-1	1734 bp upstream
Rr677060	regulatory region 677060	688 bp distal
Rr677061	regulatory region 677061	204 bp distal
Rr677062	regulatory region 677062	57 bp proximal
Rr677063	regulatory region 677063	1160 bp proximal
Rr677064	regulatory region 677064	1274 bp proximal
Rr677065	regulatory region 677065	1490 bp proximal
Rr677066	regulatory region 677066	1821 bp proximal
Rr677067	regulatory region 677067	1948 bp proximal
Tssr84512	transcription start site region 84512	523 bp downstream
Tssr84513	transcription start site region 84513	475 bp downstream
Tssr84514	transcription start site region 84514	300 bp downstream
Tssr84515	transcription start site region 84515	225 bp downstream
Tssr84516	transcription start site region 84516	201 bp downstream
Tssr84517	transcription start site region 84517	175 bp downstream
Tssr84518	transcription start site region 84518	511 bp upstream
Tssr84519	transcription start site region 84519	559 bp upstream
Tssr84520	transcription start site region 84520	711 bp upstream
Tssr84521	transcription start site region 84521	752 bp upstream
Tssr84522	transcription start site region 84522	776 bp upstream
Tssr84523	transcription start site region 84523	874 bp upstream
Tssr84524	transcription start site region 84524	1055 bp upstream
Tssr84525	transcription start site region 84525	1108 bp upstream
Tssr84526	transcription start site region 84526	1139 bp upstream
Tssr84527	transcription start site region 84527	1808 bp upstream
Tssr88995	transcription start site region 88995	669 bp upstream
Tssr88996	transcription start site region 88996	629 bp upstream
Tssr88997	transcription start site region 88997	594 bp downstream