rs52269402 SNP Detail

Summary

• ID
  rs52269402
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145814962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCC CCCACCTCTC TCTCCCTCTC
  Y
  CTCTCCCTCT CCCTCCCTCC CTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147850745	ENSMUSSNP3008161	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52269402					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145814962 () rs orientation: forward

Symbol	Name	Function Class
Cfap61	cilia and flagella associated protein 61	Intron
Rr374013	regulatory region 374013	670 bp downstream
Rr566617	regulatory region 566617	1921 bp distal
Rr566618	regulatory region 566618	1010 bp distal