rs52270001 SNP Detail

Summary

• ID
  rs52270001
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137191807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T ATGTATGTAT GTATGTATAT ATATGTGTGT GTGTATATTA
  TATATGTGTA TATATATACA TACATGTACA TATATATATA CATATATATA TATATATATA
  T
  ATACACACAC ACACACAATG CTTTTGGAGC TTAGAGATAT CTTGGGTAGT ATAAGTGCTG
  AGGAACCAAA GTTCAATCCC CAGTACCAAC ATAAAACTGG G                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss144526896	ENSMUSSNP5077810	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52270001					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137191807 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr49320	transcription start site region 49320	1991 bp downstream
Tssr53958	transcription start site region 53958	1966 bp upstream
Tssr53959	transcription start site region 53959	1953 bp upstream
Tssr53960	transcription start site region 53960	1887 bp upstream
Tssr53961	transcription start site region 53961	1788 bp upstream
Tssr53962	transcription start site region 53962	1770 bp upstream
Tssr53963	transcription start site region 53963	1731 bp upstream
Tssr53964	transcription start site region 53964	1691 bp upstream
Tssr53965	transcription start site region 53965	1666 bp upstream
Tssr53966	transcription start site region 53966	797 bp upstream
Tssr53967	transcription start site region 53967	764 bp upstream