rs52270549 SNP Detail

Summary

• ID
  rs52270549
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37692472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTAAAAA TTTATAGTTT
  GTCTCAAGTC TCATGACTGC AGGCAATTAA AAAGGTGAAG CTGACTTCAT TAAATGTCTT
  CCAGATTCAA GGTTACTAAA TCCTAACCTA GGAACGTGTG ATCTCAAGAA ACACACAATG
  GAGGCATTTA AGCAGAATCA ATTTTGTGCA ATATATTTGA TTTTGAAATA GACCATGACC
  Y
  TTGAAGGTAA TATTTTTAAC ATTTTATGGA TTATTATTAC TATTATTATT ATTAAAAATT
  TTTAAACTTA AGAGATTTGT TTTAGCACAT CTCTGGTCCA AATATTCTGA AATGTAAATA
  GGAATCTTTG AAATTATGTT TTTATAAGTG TTATGTGGTT CAAACTCTCC ATTGTTGCCT
  CTCCTCATCT TATTACATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134809909	ENSMUSSNP3689454	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss320711429	CHEV_3_37537245	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52270549					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37692472 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13100	CpG island 13100	1358 bp proximal
Gm42922	predicted gene 42922	1782 bp downstream
Rr575523	regulatory region 575523	1134 bp proximal
Rr575524	regulatory region 575524	1768 bp proximal
Spry1	sprouty RTK signaling antagonist 1	1624 bp upstream
Tssr28908	transcription start site region 28908	1341 bp upstream
Tssr28909	transcription start site region 28909	1582 bp upstream
Tssr28910	transcription start site region 28910	1605 bp upstream
Tssr28911	transcription start site region 28911	1622 bp upstream
Tssr28912	transcription start site region 28912	1662 bp upstream