rs52270645 SNP Detail

Summary

• ID
  rs52270645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32609798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAT ATATATATCA CTATATATAT
  Y
  TCACTATATA TATACACACA CACAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss919755953	MGP_WTSI_9_32698502	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	T	T	T	T	T	T	T	T	C	T	C	T	C	C	T	C	T	T	T	T	C	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs52270645					SNP	T	C	T	T	T	T	T	T	T	T	C	T	C	T	C	C	T	C	T	T	T	T	C	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919755953	MGP_WTSI_9_32698502	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32609798 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21544	CpG island 21544	1958 bp distal
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr206170	regulatory region 206170	197 bp distal
Tssr84276	transcription start site region 84276	1626 bp downstream
Tssr84277	transcription start site region 84277	1491 bp downstream
Tssr84278	transcription start site region 84278	563 bp downstream
Tssr84279	transcription start site region 84279	228 bp downstream
Tssr84280	transcription start site region 84280	908 bp upstream
Tssr84281	transcription start site region 84281	1309 bp upstream
Tssr84282	transcription start site region 84282	1388 bp upstream
Tssr84283	transcription start site region 84283	1768 bp upstream