rs52271174 SNP Detail

Summary

• ID
  rs52271174
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72440511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA CACACACCAT GCTTCCCTCT
  C
  CTCAATTGTA AGCAGATAAA CAAGT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136622073	ENSMUSSNP2626906	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323002572	CHEV_9_72381036	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52271174					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72440511 () rs orientation: forward

Symbol	Name	Function Class
4930509E16Rik	RIKEN cDNA 4930509E16 gene	1371 bp upstream
Cpgi22017	CpG island 22017	59 bp distal
Rfx7	regulatory factor X, 7	within coordinates
Rr401509	regulatory region 401509	1309 bp downstream
Rr682770	regulatory region 682770	484 bp distal
Rr682771	regulatory region 682771	1257 bp distal
Tssr86008	transcription start site region 86008	1472 bp downstream
Tssr86009	transcription start site region 86009	1279 bp downstream
Tssr86010	transcription start site region 86010	1022 bp downstream
Tssr86011	transcription start site region 86011	958 bp downstream
Tssr86012	transcription start site region 86012	401 bp downstream