rs52271392 SNP Detail

Summary

• ID
  rs52271392
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:127600779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCCCAC CATCAAAACC
  CCTAAAAATG CCACTAAGAC CGTTAACTAA TACCCACTTG GGACAGGAAT CATATGACTT
  TAATCTACAG ACTCACACCT TTGGCCTGAG CTGGCTAGAC ACAGAGGGTG ACAAGCTCCT
  AAGGACTGAT AGTCCAACTC TAGAGGTTCT ACGGGTCACT GACAACAAGA ATTTCTCTTG
  R
  ATCAACCCTG AGACTGGGCA TGAAATTATA CGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAAGAAAAG AAAGAAAAAG AAACATAGAG GCAAACCCAC ATCCCAGAGG
  GAGGCCAAAC CAAGCTAATC AAAGCAAAAG AAAGTCCAGA CCCAAACCCA GATCCCACCC
  ACAGGCTCAA ATGTGATTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60676587	NES16238034	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52271392					SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60676587	NES16238034	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:127600779 () rs orientation: forward

Symbol	Name	Function Class
Gm31718	predicted gene, 31718	within coordinates
Rr175379	regulatory region 175379	822 bp proximal
Rr188683	regulatory region 188683	within coordinates
Tssr83525	transcription start site region 83525	1314 bp upstream