rs52272085 SNP Detail

Summary

• ID
  rs52272085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:34583996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTGCCTT CTTCCAATCT
  GTATTTAAAG TGTCTGTCTA ACAAGCCAAA ATAAGCTTTA TATGCAAATA TCTAGTCAAA
  AACTCTGACC CATCATTGAT TCTGCTCCAC TGAATAGTAT GCCCTATTTT CTCCTCTGTG
  AAAAATTACA CACACACACA CACACACACA CACACACACA CACACACGCA GAGGCATGCA
  Y
  GCACACACAT GTACATTTGT ATACACACAA AGCAGAGCAA AAGAAACAGA GAGGCAGAAA
  GCAAGAAAAT CAATTGATGT ATCAGTCAAT CAGTCAACCA TAGCCCCCTA TATTCTTCAA
  AGAGGGAACA ACCTTGTGAG TGTGCCATTT GCCTGATTTA ACAACTTCTG TTACTTAGAG
  ATTTTCTGCA GTGCTAAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146341840	ENSMUSSNP2364181	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52272085					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34583996 () rs orientation: forward

Symbol	Name	Function Class
Ifit3b	interferon-induced protein with tetratricopeptide repeats 3B	1374 bp upstream
Rr405932	regulatory region 405932	916 bp upstream
Rr546756	regulatory region 546756	884 bp proximal
Rr546757	regulatory region 546757	1385 bp proximal
Tssr156136	transcription start site region 156136	927 bp upstream
Tssr156137	transcription start site region 156137	1331 bp upstream