rs52272417 SNP Detail

Summary

• ID
  rs52272417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:130064396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGGAGTT GAGGAATATA
  AAATGCTGTT ATTATATGAA TGTCAAATTT AGTTTTAGCA TCCAGTATAC ATTGCAGGAA
  AATGATGGCT GAGGAAACCA AAGTCAGTCC TGCTTTTAGA GATGAGGACT GCTGACACTG
  GAACCACCAG CTATTCAATA CTCAACCTCA AAGCTTTAAA GTCAAGATCA CAACTAAGTC
  Y
  AGTAAATTAT TCTTTCAAAG GACAGGAAGG GAAAAAAAGT AAAAAAAAAA AAAAAAAAAA
  AAATATATAT ATATATATAT ACACACACAC ACACACATAT ATATATATAT ATATACATAT
  ATATATTCAT CAATTAAAGA GATTTAAAAT GTATTATCCA AATGTAATGT ATGACCCTTG
  TTCAAGAACT GATGGTGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61062778	NES16064267	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs52272417					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61062778	NES16064267	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130064396 () rs orientation: forward

Symbol	Name	Function Class
Ate1	arginyltransferase 1	within coordinates
Tssr75149	transcription start site region 75149	28 bp downstream
Tssr75150	transcription start site region 75150	1164 bp downstream