rs52272886 SNP Detail

Summary

• ID
  rs52272886
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4876672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGATGAAT TTTCTTGTTG GTCACTTTAC TCTTCTTTCT
  TTCTTTCTTT CTTTCTTTCT TTCTTTTCTT TTCTTTTTCT TTTCTTTTTT TTTTTTTTTT
  K
  GGCTTTTTGG TTTTTCGAGG CAGGGTTTCT CTGTGTAGCT CTGGCTGTCC TGGAACTCAC
  TCTGTAGACC AGGCTGGCCT GGAACTCAGA AATCCACCT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148476944	ENSMUSSNP1807017	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52272886					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4876672 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9	CpG island 9	992 bp proximal
Gm37988	predicted gene, 37988	1443 bp upstream
Gm70766	predicted gene, 70766	815 bp downstream
Lypla1	lysophospholipase 1	1374 bp upstream
Rr407434	regulatory region 407434	826 bp proximal
Rr407435	regulatory region 407435	1271 bp proximal
Rr407436	regulatory region 407436	1646 bp proximal
Tssr5801	transcription start site region 5801	1193 bp upstream
Tssr5802	transcription start site region 5802	1417 bp upstream
Tssr5803	transcription start site region 5803	1797 bp upstream
Tssr10888	transcription start site region 10888	1211 bp downstream
Tssr10889	transcription start site region 10889	1269 bp downstream