rs52273099 SNP Detail

Summary

• ID
  rs52273099
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151246860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TATAAGCTA TTGAAAAGGT CTGATTTAGG
  ACctggagag atggctcagc agttaagagc actgtctgct cttccagagg tcctgagttc
  aattcccagt aaccacatgg tggctcacaa ccatctgtaa tgggatctga tgccctcttc
  W
  ggtgtgtctg aagacagcta cagtgtactc atatatatat ataaaataaa aaatttttta
  aagaGGTTTG ATTTAGGAAA AGGTTTGAAT TAACGGTATT TCTGTCCCTT CCTCTTCCCT
  tcactcactc actcactcac tcattcattc                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss145718920	ENSMUSSNP2556755	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A		T
ss320055954	CHEV_1_153218239	CHEVERUD	SCREENING_POP	f	SNP				A		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs52273099					SNP	A	A	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151246860 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr420285	regulatory region 420285			461 bp proximal
Swt1	SWT1 RNA endoribonuclease homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant