rs52274239 SNP Detail

Summary

• ID
  rs52274239
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:146439650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GTTCTGTGTT CAGTCAAAGC AGAAAGTGGG CCCCTCCCCC
  ATGCGACCTG ATTATATCCT AAATAATTTC TATTTGTGTG TGTGTGTGTG TGTGTGTGAG
  T
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAAA
  GAGGTTAGTA ACTCAATGGT CTATTCTCAT TTGGAAACCC A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss133993886	ENSMUSSNP5995891	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52274239					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:146439650 () rs orientation: forward

Symbol	Name	Function Class
Rr134091	regulatory region 134091	951 bp proximal
Rr139420	regulatory region 139420	within coordinates
Rr400056	regulatory region 400056	83 bp upstream