rs52275297 SNP Detail

Summary

• ID
  rs52275297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29301794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCT GGGACCAAAG GCAGGTGCCA
  Y
  CACTGCCTGG TTCAAAGTAT TATCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325352874	CHEV_17_29219765	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52275297					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29301794 () rs orientation: forward

Symbol	Name	Function Class
Rr370203	regulatory region 370203	637 bp downstream
Rr524789	regulatory region 524789	286 bp distal
Rr524790	regulatory region 524790	1447 bp proximal
Tssr143493	transcription start site region 143493	1233 bp downstream
Tssr147178	transcription start site region 147178	1964 bp upstream