rs52275587 SNP Detail

Summary

• ID
  rs52275587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:11367526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAATTTGA TAGTTATTAA
  GCATAAGTGC TTGTCTGTCT GATCTATAGA ATTCATTATT ATAAACAAAA CAAGACACTT
  GGCTTAATCT GGAGTAGAGA AGCCCTGCAA ACAGCTCATA TAATTTATAT GAAAGGAGTA
  TTTCATGATA TAATATTTGA TAAAATGTTT ATCCAGATCA CAAGGTGGAT GACCAGGGTG
  Y
  TGGTATTACA AGGATCCTGT CTGTCTTTGG ATCTGTCTGT CTGTTTTAAT TTTTCATGTT
  TGTCTTCATT TCTTTCTCCT TTTTTTTTTT TTTTTTTTTT TTTTTTTTGG TTTTTCTAGA
  CAGGGTTTCT CTGTATAGTC CTGGCTGCCT GCTGTCCTGG AACTCACTCT GTAGACCAGG
  CTGGCCTCAA AAGAAAATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63647858	NES17057585	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52275587					SNP	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63647858	NES17057585	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:11367526 () rs orientation: forward

Symbol	Name	Function Class
5830487K18Rik	RIKEN cDNA 5830487K18 gene	80 bp upstream
Snx29	sorting nexin 29	Intron