rs52276604 SNP Detail

Summary

• ID
  rs52276604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91190776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGCCTAG AAAGTCATCA
  AGCTTTGTCC TCTCCCACTG GACATTTCCT AAGTTGGGTT TATTTTGCAA GTAGAGCCAA
  GTGTACTGGC ACGTGTTTGT AATCCTAGTA GTTGGGAGGC TGATCTGAAT TTAAGGTGAC
  TGTAGGCTAC ACACTAGGCT AAGGCAGGCT AAGGGAAGCA GGGGAGAAGG AGAAAGGAAA
  R
  AAGGAAGGGA AGGAAGCAAA GAGCAAAGGT GTGTGTTGAG GAATTATTAA CAAATTAGCC
  TGACAAATGA GGCTCTAAAA ATTGAAATTA TTTCTTCTTT AGACTACTAG TTCTCTAACC
  ACCAAACTCA TTATAGTTAC AAAATGGTTA AGAACATTTG TTTATCCATT TATTTGAAAA
  GATATTAGTC AGTCACCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146924381	ENSMUSSNP4300989	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52276604					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91190776 () rs orientation: forward

Symbol	Name	Function Class
Cstpp1	centriolar satellite-associated tubulin polyglutamylase complex regulator 1	within coordinates
Rr373536	regulatory region 373536	9 bp upstream
Rr560718	regulatory region 560718	382 bp proximal