rs52277245 SNP Detail

Summary

• ID
  rs52277245
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:141463590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAG CCAGCAAGGT TTGTGTAGGG
  G
  GGGGGGAGGG GGGAGAGAGA GAAAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss134479564	ENSMUSSNP3084386	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs52277245					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:141463590 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22978	CpG island 22978	529 bp proximal
Tmem164	transmembrane protein 164	812 bp upstream
Tssr162238	transcription start site region 162238	216 bp upstream
Tssr162239	transcription start site region 162239	804 bp upstream
Tssr162240	transcription start site region 162240	1257 bp upstream
Tssr162241	transcription start site region 162241	1289 bp upstream