rs52278344 SNP Detail

Summary

• ID
  rs52278344
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:65510176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCTTTAT TTCTGTGTAC
  ATGTGTGTGT GTGTATCTCA CCTTGATTAT ATATAATATG TATATATACA TACATACATA
  TATACATACA TACATATATA CATATATATA CATGTATACA TACATACATA TACACAGAGA
  GAGACAGAGA CAGAGTCAAA GAAAGACACA GAGATACACA GAGAGAAAGT GTATGTGTGT
  A
  TGTGTATGTG TGTGTGGGTG TGTGCACATT GAGAGTGCTA CGGCATGTTT GTGCAAGTCA
  GAGGACAACT TTCATGAGTC AGTTCTTACC TTCAGCTATG GGACTCAGGG GTTAAACTCT
  GACTGTCAGG TTTATACTAC AAATACTTTT ATCATCTGAG CCCTCTCTCT ACCCCTTAAC
  TTTCTTTTAA CAAACTCCTT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147311808	ENSMUSSNP3762460	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52278344					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65510176 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpk2	alpha-kinase 2			Intron
				Noncoding-Transcript-Variant
Tssr151596	transcription start site region 151596			1395 bp downstream
Tssr153695	transcription start site region 153695			1689 bp upstream