rs52278835 SNP Detail

Summary

• ID
  rs52278835
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:15077465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CTCTCTGTCT CTGTCTCTGT CTCTGTCTCT TTCTCTCTCT
  CTCTCTCTCT CTCGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTCTCCT GAGAGGCTCT
  A
  CCAGTGCAAA TACAAATACA GAGGTGGATG CTCTCAGTCA GCCATTAGAT TAAACACAAT
  GCCCCAGTGG AGGAGCTAGA AAAACGACCC AAGGAGCTGA C                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss147915733	ENSMUSSNP3635089	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52278835					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:15077465 () rs orientation: forward

Symbol	Name	Function Class
D5Mit103b	DNA segment, Chr 5, Massachusetts Institute of Technology 103b	within coordinates
Gm17019	predicted gene 17019	1499 bp downstream
Gm71745	predicted gene, 71745	within coordinates