rs52279157 SNP Detail

Summary

• ID
  rs52279157
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28665246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGATGGCT TAGAAAGTAA
  AAGCGCTTGC TACACATGCC TGAAATCTGG AGTTTGATCC CTGGATTCCA CATGGAAGGA
  AAGAACCATA TCCTAAAAGT ATCCTCTGGC CTCTACACAA ATGCTGTGGC ATATACATGC
  ATACACACCA ATCATAAATA AAATACGAAG ACATTTTACA ACACTGGATG CTGACCCCAG
  R
  CCTGTACACA AGTGCAGACA CATGCCAACA CATACACATG TATACAACAC ATACAGAGTC
  AAACTCAGAA TCAAAGTAGG TTAAAGGTTA CTAGGGGGTG TTGTAAGGTA CAGAGTTTCT
  GTTTGGGGTG ATGAAAAGAA TGACCGGTGA TGGTTTCACA ATATTGGGAG GGAGTGTACT
  TAATGCCACT TAGGAACATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60561159	NES16570518	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52279157					SNP	A	A	A	A	A	A	A	A	A	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60561159	NES16570518	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28665246 () rs orientation: forward

Symbol	Name	Function Class
Fkbp5	FK506 binding protein 5	within coordinates
Gm22146	predicted gene, 22146	within coordinates
Gm55779	predicted gene, 55779	589 bp upstream