rs52279742 SNP Detail

Summary

• ID
  rs52279742
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66363193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAA AATTGTCTAT TTCTTTCTTT
  C
  TTTATTTTCT GACCAAACCC CTGTA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss144494260	ENSMUSSNP4769808	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss319754094	CHEV_1_66370608	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52279742					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66363193 () rs orientation: forward

Symbol	Name	Function Class
Gm10558	predicted gene 10558	within coordinates
Map2	microtubule-associated protein 2	within coordinates
Rr412443	regulatory region 412443	1104 bp distal
Rr412444	regulatory region 412444	within coordinates
Tssr7150	transcription start site region 7150	1990 bp downstream
Tssr7151	transcription start site region 7151	1961 bp downstream
Tssr7152	transcription start site region 7152	1944 bp downstream
Tssr7153	transcription start site region 7153	1915 bp downstream
Tssr7154	transcription start site region 7154	49 bp downstream