rs52279935 SNP Detail

Summary

• ID
  rs52279935
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156075883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGTG CGCGCGCACG CGCTCAGATG
  T
  AATCTCCACA TTCATAACCA GATGT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148124164	ENSMUSSNP5799061	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52279935					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156075883 () rs orientation: forward

Symbol	Name	Function Class
B3galt6	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	within coordinates
Cpgi15496	CpG island 15496	50 bp proximal
Rr377473	regulatory region 377473	791 bp upstream
Rr606628	regulatory region 606628	897 bp distal
Rr606629	regulatory region 606629	64 bp distal
Rr606630	regulatory region 606630	1148 bp proximal
Rr606631	regulatory region 606631	1213 bp proximal
Rr606632	regulatory region 606632	1224 bp proximal
Rr606633	regulatory region 606633	1466 bp proximal
Rr606634	regulatory region 606634	1827 bp proximal
Rr606635	regulatory region 606635	1962 bp proximal
Sdf4	stromal cell derived factor 4	1446 bp upstream
Tssr1404	transcription start site region 1404	1513 bp upstream
Tssr40748	transcription start site region 40748	974 bp upstream
Tssr40749	transcription start site region 40749	1717 bp upstream
Tssr40750	transcription start site region 40750	1804 bp upstream
Tssr40751	transcription start site region 40751	1879 bp upstream
Tssr44987	transcription start site region 44987	905 bp downstream
Tssr44988	transcription start site region 44988	1178 bp downstream