rs52280219 SNP Detail

Summary

• ID
  rs52280219
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:83107236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTAGAGGAT TAGCGCTCAA CAGGATGCTA GCTTCTCCTT
  GTCCTTCTCT TTCCCATCCT GTCATCCTGT CATCTTCTTC TTTCCTTTCT CCTCTACGAT
  R
  TGTAAGAACA TGGCAAAATG ATAGCCATCT CTGGAGCAGG AAAAATCATC TCACCAGAAC
  ACAAGTCAGC TGGATTCTTA TTCCTAAAAT CCACTGCCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145303909	ENSMUSSNP4070025	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss322735881	CHEV_8_84904506	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52280219					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:83107236 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Il15	interleukin 15			Intron
				Noncoding-Transcript-Variant
Tssr81957	transcription start site region 81957			1542 bp upstream
Tssr81958	transcription start site region 81958			1526 bp upstream
Tssr81959	transcription start site region 81959			511 bp upstream
Tssr81960	transcription start site region 81960			324 bp upstream
Tssr81961	transcription start site region 81961			286 bp upstream