rs52280305 SNP Detail

Summary

• ID
  rs52280305
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115078517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG GGAAGGGGAG ACTGAGGGAC
  S
  GGCTCTGGAG AAGAGAGGGG AGGCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323861638	CHEV_11_115049005	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52280305					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115078517 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4111	CpG island 4111	within coordinates
Nat9	N-acetyltransferase 9 (GCN5-related, putative)	within coordinates
Rr403112	regulatory region 403112	188 bp downstream
Rr459794	regulatory region 459794	194 bp distal
Rr459795	regulatory region 459795	within coordinates
Rr459796	regulatory region 459796	143 bp proximal
Rr459797	regulatory region 459797	898 bp proximal
Rr459798	regulatory region 459798	1028 bp proximal
Rr459799	regulatory region 459799	1642 bp proximal
Tmem104	transmembrane protein 104	within coordinates
Tssr3728	transcription start site region 3728	120 bp downstream
Tssr3729	transcription start site region 3729	964 bp downstream
Tssr3730	transcription start site region 3730	1886 bp upstream
Tssr105849	transcription start site region 105849	129 bp downstream
Tssr111731	transcription start site region 111731	407 bp upstream
Tssr111732	transcription start site region 111732	373 bp upstream
Tssr111733	transcription start site region 111733	332 bp upstream
Tssr111734	transcription start site region 111734	136 bp downstream
Tssr111735	transcription start site region 111735	168 bp downstream
Tssr111736	transcription start site region 111736	1073 bp downstream