rs52280981 SNP Detail

Summary

• ID
  rs52280981
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127931652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ggcacaaga cttttattta ttagactatg
  tatctagtag agacattgtc accctgtttt ggattaactc tatcttaact cattttaTGA
  GTGatatata tatattatat atatatatta tatatatata tatagcatat aatatatatg
  M
  tatatatata tatatTTCTT TGAAAGATCC CTAGTGTCAT TTATCCTTCC CCATATTCCC
  TCTTCTACCC TGCCCTCTCT TCTCCCACCA CAATCTAACA CTTCCTATTC ATTATTCTTC
  TTTATACATT GCAATTTTTG ACTTCTCCTT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147551153	ENSMUSSNP13453	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
ss320501501	CHEV_2_127915468	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52280981					SNP	A	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127931652 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	Intron
Gm23101	predicted gene, 23101	192 bp upstream
Rr564642	regulatory region 564642	1284 bp distal
Rr564643	regulatory region 564643	1599 bp proximal