rs52281744 SNP Detail

Summary

• ID
  rs52281744
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:22534488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGA ATGGAGGGCA GGGGGAGGCA
  S
  AAGGGAGGAA GAGGCAAGGG AGACA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145304164	ENSMUSSNP5601410	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss325324152	CHEV_17_22452474	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52281744					SNP	G	G	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22534488 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm7072	predicted gene 7072			Intron
				mRNA-UTR
Gm53992	predicted gene, 53992			within coordinates
Rr523017	regulatory region 523017			681 bp distal
Rr523018	regulatory region 523018			180 bp distal
Tssr146602	transcription start site region 146602			698 bp upstream
Tssr146603	transcription start site region 146603			661 bp upstream