rs52282823 SNP Detail

Summary

• ID
  rs52282823
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34504096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTTAGCAC TGAAGGAGAT CGAGGTGGAG ACAGAAGTTT
  AAGGATATCC TTGGCTACAC AGCAAGTTTA AGGCCAGCCT GGGCTACTTG AGACTGACTC
  M
  AAAAAAAAAA AAAAAAAAAA AAAAAAAGAA AAGAAAAAAA GAAACAAAAC ACAAATAAAA
  TCCTTTTTTC CCTTCTAGTA TATGCTAAAT TCCAATCTG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146939492	ENSMUSSNP2730441	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss325582023	CHEV_18_34530697	CHEVERUD	SCREENING_POP	f	SNP		C	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52282823					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34504096 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9816	CpG island 9816	1381 bp proximal
Reep5	receptor accessory protein 5	within coordinates
Rr352680	regulatory region 352680	504 bp proximal
Tssr152789	transcription start site region 152789	1 bp upstream
Tssr152790	transcription start site region 152790	799 bp downstream
Tssr152791	transcription start site region 152791	921 bp downstream
Tssr152792	transcription start site region 152792	1002 bp downstream
Tssr152793	transcription start site region 152793	1401 bp downstream
Tssr152794	transcription start site region 152794	1448 bp downstream
Tssr152795	transcription start site region 152795	1458 bp downstream