rs52283249 SNP Detail

Summary

• ID
  rs52283249
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148373618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAT AGTTTTAATT AAGAGGGCAG
  C
  TTGGGAGTTC TCTGAACCCC TCTCA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148000266	ENSMUSSNP4509182	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss321418881	CHEV_4_147663270	CHEVERUD	SCREENING_POP	f	SNP			C		C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs52283249					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148373618 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15301	CpG island 15301	379 bp distal
Disp3	dispatched RND transporter family member 3	1196 bp upstream
Gm68159	predicted gene, 68159	237 bp downstream
Rr604639	regulatory region 604639	1207 bp distal
Rr604640	regulatory region 604640	884 bp distal
Rr604641	regulatory region 604641	986 bp distal
Rr604642	regulatory region 604642	327 bp distal
Rr604643	regulatory region 604643	843 bp distal
Rr604644	regulatory region 604644	708 bp distal
Rr604645	regulatory region 604645	563 bp distal
Rr604646	regulatory region 604646	1957 bp proximal
Tssr44603	transcription start site region 44603	1207 bp upstream