rs52283397 SNP Detail

Summary

• ID
  rs52283397
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:29583993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAC CTTGGGGTGG GGGGAACAAA
  T
  CAAAACAAAA AACCCAAATA AACAA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss137527438	ENSMUSSNP5012175	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323979703	CHEV_12_30218859	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52283397					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:29583993 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4517	CpG island 4517	755 bp proximal
Myt1l	myelin transcription factor 1-like	within coordinates
Rr464425	regulatory region 464425	54 bp distal
Rr464426	regulatory region 464426	202 bp proximal
Rr464427	regulatory region 464427	632 bp proximal
Rr464428	regulatory region 464428	935 bp proximal
Tssr113063	transcription start site region 113063	703 bp downstream
Tssr113064	transcription start site region 113064	679 bp downstream
Tssr113065	transcription start site region 113065	630 bp downstream
Tssr113066	transcription start site region 113066	548 bp downstream
Tssr113067	transcription start site region 113067	527 bp downstream
Tssr113068	transcription start site region 113068	502 bp downstream
Tssr113069	transcription start site region 113069	567 bp upstream
Tssr113070	transcription start site region 113070	722 bp upstream
Tssr113071	transcription start site region 113071	853 bp upstream
Tssr113072	transcription start site region 113072	1187 bp upstream
Tssr113073	transcription start site region 113073	1215 bp upstream