rs52284219 SNP Detail

Summary

• ID
  rs52284219
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118087064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAG ATACACACAG AGAAACACAC
  G
  AACACACAGA CATACACACA CATAC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145780822	ENSMUSSNP795122	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52284219					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118087064 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19620	CpG island 19620	1894 bp proximal
Itpripl2	inositol 1,4,5-triphosphate receptor interacting protein-like 2	within coordinates
Rr381380	regulatory region 381380	283 bp downstream
Rr654485	regulatory region 654485	484 bp proximal
Rr654486	regulatory region 654486	681 bp proximal
Tssr74439	transcription start site region 74439	275 bp upstream
Tssr74440	transcription start site region 74440	412 bp downstream