rs52284234 SNP Detail

Summary

• ID
  rs52284234
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137177562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACAAGAAC AAAGAATGAA
  AAAACTCAAC AAAAAGTATA CAGTTAATGA AATTATAGCA TTGGGGAAAA AAAAGACAGA
  CACAAAGGAA AAAACAAGAG AAACAGGATA TTGTGTGGAG ATTTAAATGT GTGTATGTGT
  GTGAGTAGGT ACGTATATGA GTGTGGGTAT GAGTGTGTGA GTGTGTGTGT GTGTGAGTGA
  S
  GGTGGAGAAT GGAACACATG CTGTAGTGAA CACAAGACAT CAGAAAGAGG TGAGGAACAC
  CACAGTGCAT GAGGACAGAG GAATGATAGA GAGTAATACT AAGATAAGAA CAAAAACNNN
  NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
  NNNNNNNNNN NNNNNNNNNN                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321701917	CHEV_5_137624585	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52284234					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137177562 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	545 bp downstream
Tssr1678	transcription start site region 1678	1770 bp downstream
Tssr49309	transcription start site region 49309	1064 bp upstream
Tssr49310	transcription start site region 49310	1424 bp upstream
Tssr49311	transcription start site region 49311	1438 bp upstream
Tssr49312	transcription start site region 49312	1818 bp upstream
Tssr53918	transcription start site region 53918	1948 bp upstream
Tssr53919	transcription start site region 53919	924 bp downstream
Tssr53920	transcription start site region 53920	940 bp downstream
Tssr53921	transcription start site region 53921	1095 bp downstream
Tssr53922	transcription start site region 53922	1136 bp downstream
Tssr53923	transcription start site region 53923	1177 bp downstream
Tssr53924	transcription start site region 53924	1191 bp downstream
Tssr53925	transcription start site region 53925	1229 bp downstream
Tssr53926	transcription start site region 53926	1260 bp downstream
Tssr53927	transcription start site region 53927	1409 bp downstream
Tssr53928	transcription start site region 53928	1427 bp downstream
Tssr53929	transcription start site region 53929	1464 bp downstream
Tssr53930	transcription start site region 53930	1529 bp downstream
Tssr53931	transcription start site region 53931	1554 bp downstream
Tssr53932	transcription start site region 53932	1570 bp downstream
Tssr53933	transcription start site region 53933	1608 bp downstream
Tssr53934	transcription start site region 53934	1640 bp downstream
Tssr53935	transcription start site region 53935	1691 bp downstream
Tssr53936	transcription start site region 53936	1712 bp downstream
Tssr53937	transcription start site region 53937	1802 bp downstream
Tssr53938	transcription start site region 53938	1838 bp downstream
Tssr53939	transcription start site region 53939	1892 bp downstream