rs52284711 SNP Detail

Summary

• ID
  rs52284711
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134947305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAAGTTC AGCACACCGA
  GACCAACCAC TGGGGGGCAG CAGCAGAGCA GCAGAAAGTC ATCTGTCTAG AAGCTAGGAG
  GGCTGCTTAG CACTCCATCT CTATCTCTAA GAAGCTATTC AAAACACAAA CAAAAAAGCA
  GTATAGTATA CACAGCTGAA AATTAATTAT ATTAAAATTA AAAATAATAC TTTTGGCCTA
  W
  GAAAATATGG AAATGAACAC CTGCAGTTCG TGGAAATACA AACTGGTACA GACTTTGAAA
  TTTTGGCAAA ATGCATAAAG TAGCTAGAGA TGGTGGTACG GGCTATAATC TGCATCCAGG
  AGAGCTGCAG CCAACAGTAA GACACCGTCT CAAAAGGACG AGGAAAGGTG CAAACCTTCC
  CACACCTACC TGTAACCTAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147541653	ENSMUSSNP3441917	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
ss321351241	CHEV_4_134775909	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52284711					SNP	A	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134947305 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Tssr43965	transcription start site region 43965	1340 bp upstream