rs52285098 SNP Detail

Summary

• ID
  rs52285098
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114225978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCAGGCTG GAGAGATGGC
  TCAGTGGTTA AGAGCACTAA CTGCTTTTCC AGAGGTCCTG AGTTCAAATC CCAGCAACTA
  CATGGTGGCT CACAAATATC TGTAAGGGGA TCCCATGCCC TCTTCTGGTG TGTCTGAAGA
  CAATGACAGT GTACTCATAT AAATAAAATA AATCTTAAAA AAAAAAAAAA AAAGAAGAAG
  M
  AGCAGCAGCT AGAAGGTGTT GGTGGGTGGG TGTTTGTTGT TTTTGTTTTG TAACTTGTGA
  GTACATGCAT GATGCTCATT AGGGACCTTC TGAGAATTCA GACAGACTTT AATCAATTCT
  GCAGGTACAG TAGCCTGAAA TGGTCTGTGC CCACCAAAGC ACAGGCTGAG TCACTAACTC
  CAACAGTGAA CCAGACATCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145296569	ENSMUSSNP2541050	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52285098					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114225978 () rs orientation: forward

Symbol	Name	Function Class
Arl15	ADP-ribosylation factor-like 15	within coordinates
Gm61348	predicted gene, 61348	7 bp downstream
Rr282443	regulatory region 282443	within coordinates
Rr282444	regulatory region 282444	1823 bp proximal