rs52285196 SNP Detail

Summary

• ID
  rs52285196
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180535482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCCAAACT CAGAGGCATG GTGGGATCCT GGGACTGTGT
  GTGTGTGTGT GTGTGTGTGT AAGAGAGACA GACAGACAGA CAGACAGACA GACAGACAGA
  Y
  AGAGAGACAG GCAGAAACAG AGACAGAGTC AGAGAGTGAC AAGGAAGCCC TGTGTGTGAC
  CTTTCTACTT AGTTCTGAGT TTGGTTTTAC TCACCCCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146385054	ENSMUSSNP5360280	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52285196					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180535482 () rs orientation: forward

Symbol	Name	Function Class
Rr424548	regulatory region 424548	7 bp proximal
Rr424549	regulatory region 424549	1079 bp proximal