rs52285480 SNP Detail

Summary

• ID
  rs52285480
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21422308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTT AGAAAAAAAA ACCCATAGGG
  C
  TTCAATCTGA ATAATAAAAT ACTAT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss137298142	ENSMUSSNP3649449	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss323931429	CHEV_12_21378168	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52285480					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21422308 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	within coordinates
Cpgi4477	CpG island 4477	880 bp proximal
Gm49586	predicted gene, 49586	1366 bp upstream
Rr463710	regulatory region 463710	1713 bp distal
Rr463711	regulatory region 463711	1326 bp distal
Rr463712	regulatory region 463712	1111 bp proximal
Rr463713	regulatory region 463713	1222 bp proximal
Rr463714	regulatory region 463714	1236 bp proximal
Rr463715	regulatory region 463715	1377 bp proximal
Rr463716	regulatory region 463716	1416 bp proximal
Rr463717	regulatory region 463717	1904 bp proximal
Tssr112932	transcription start site region 112932	1383 bp upstream
Tssr112933	transcription start site region 112933	1945 bp upstream
Tssr115856	transcription start site region 115856	1174 bp downstream
Tssr115857	transcription start site region 115857	1194 bp downstream
Tssr115858	transcription start site region 115858	1219 bp downstream
Tssr115859	transcription start site region 115859	1243 bp downstream
Tssr115860	transcription start site region 115860	1299 bp downstream