rs52285648 SNP Detail

Summary

• ID
  rs52285648
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:77727230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGT AGGGGAGCAG GGCAGGGGGG
  Y
  GGGGTGGGGA GGGTATAGGG GACTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	PWK/PhJ
ss918865363	MGP_WTSI_7_78077482	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	PWK/PhJ
rs52285648					SNP	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918865363	MGP_WTSI_7_78077482	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:77727230 () rs orientation: forward

Symbol	Name	Function Class
Gm53379	predicted gene, 53379	within coordinates
Tssr67298	transcription start site region 67298	135 bp upstream