rs52285799 SNP Detail

Summary

• ID
  rs52285799
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:175460202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG TGTGTGTGTG TGTGTGTGTG
  Y
  GCGCGCGCGC GCGCGCGCGC GAGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146323474	ENSMUSSNP5208284	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52285799					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175460202 () rs orientation: forward

Symbol	Name	Function Class
Kmo	kynurenine 3-monooxygenase	within coordinates
Rr396618	regulatory region 396618	517 bp downstream
Tssr10313	transcription start site region 10313	658 bp downstream
Tssr10314	transcription start site region 10314	635 bp downstream
Tssr10315	transcription start site region 10315	612 bp downstream
Tssr10316	transcription start site region 10316	579 bp downstream
Tssr10317	transcription start site region 10317	542 bp downstream
Tssr10318	transcription start site region 10318	535 bp downstream
Tssr10319	transcription start site region 10319	525 bp downstream
Tssr10320	transcription start site region 10320	503 bp downstream
Tssr10321	transcription start site region 10321	485 bp downstream
Tssr10322	transcription start site region 10322	476 bp downstream
Tssr10323	transcription start site region 10323	451 bp downstream