rs52286722 SNP Detail

Summary

• ID
  rs52286722
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86976154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGGACAG GTGGATCTCT
  GTGAGTTTGA AGCCAGCCTG TCTACATAAC AAGTTCCAGT CCAGCCAGTG AGTGAAACCC
  TGTCTTTAGA GGGGGGTAGG GGGCTATTTT TCCCTCTTTT CTTCATAGCA TTCTCCACCT
  GTTTCAATAA CAGGCACTGC GTCGGGGCCC ATAGCAGCGC CATTTGAGGA CTCCACCCCA
  M
  CAGAAACCTG CCTTTCACTT CAGTAAAGGT TAAACATTTT CTTTAGGAAT TTTCTTTCTC
  ACAATTATTA TTTTTTAATT TCCTGTATAA TAGTGGATAC AAAATTGTCT TTCTATTAAA
  TAAGTAGTTT GACTAACGCA CATGGAACTT TGCAACCAAA CTTCCCAAGC TTGCCGTCAG
  ATGAAGGCCT CCAAGGCACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133361197	ENSMUSSNP5386217	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52286722					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86976154 () rs orientation: forward

Symbol	Name	Function Class
Aak1	AP2 associated kinase 1	mRNA-UTR
Rr633570	regulatory region 633570	1933 bp distal