rs52287193 SNP Detail

Summary

• ID
  rs52287193
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30212708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGA GGGGAGGAGA AGTGCTAGCC
  Y
  AGGGTGGTAG TGACTTGGTA ACCGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148681091	ENSMUSSNP1399249	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss322134942	CHEV_7_31298302	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52287193					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30212708 () rs orientation: forward

Symbol	Name	Function Class
Arhgap33os	Rho GTPase activating protein 33, opposite strand	1839 bp upstream
Prodh2	proline dehydrogenase (oxidase) 2	within coordinates
Tssr2186	transcription start site region 2186	1946 bp upstream
Tssr65778	transcription start site region 65778	1862 bp upstream