rs52287367 SNP Detail

Summary

• ID
  rs52287367
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154977179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACAGACA GATTTATCGA
  TGCCGCGTAG TAAGTAGCAC TTGAACGAGT GTACAGACAT ATCCCATGTT CCTGTCTAAC
  ACAGCTCGCT TAAATTTACA GGCCAACTGA CGATCCGTCT GGGGTGGAGT CAGTGAGCTG
  TCTGATAGCC ATGGGCAGGT TCAGGACCTG GTCCTTTCAA AGCTTTGTTT GTTTCATCAG
  Y
  GCTTCTTTTT AAAATATTTA TTTATTTACT TACTTGCCTG CTTATTTATT TATTTATTTA
  TTTATTTATT TATTTATTTA TTTATAGAGA GGGTTTTTTT CGTTCTGTCC TGTAGTCCTG
  TTCTGGAACT AGCTCTGTAG ACCAAGCTAG ACTTGAACTC AGAGATCTGC CTGCCGCTGC
  CTCCCCAGTG CTGGGACTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145775337	ENSMUSSNP4528400	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52287367					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154977179 () rs orientation: forward

Symbol	Name	Function Class
Cpgi882	CpG island 882	1577 bp distal
Gm69473	predicted gene, 69473	within coordinates
Gm69486	predicted gene, 69486	within coordinates
Ier5	immediate early response 5	1797 bp upstream
Rr28750	regulatory region 28750	1378 bp distal
Rr396412	regulatory region 396412	1559 bp downstream
Tssr14337	transcription start site region 14337	1952 bp upstream
Tssr14338	transcription start site region 14338	1889 bp upstream
Tssr14339	transcription start site region 14339	1800 bp upstream