rs52287957 SNP Detail

Summary

• ID
  rs52287957
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:84564080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGGCTCT GGGTTGAGTA
  GGGGACTCCT GAAGGAGGGG GATGAAGGTG ACATTATTGA GTGTGAACAG CTGTCTTTCC
  CAGGGTTGCT GCTGCACCAA CTCCGTAGTT TGTCCTTGTC AGCATCTGTC TTCAGACCGG
  CTGCCCTCAG GTGGATACCA GGTTTTTTTG TTTGGTTGGT TTATTTGTTT TTGTTTTTTC
  R
  AGACAGGGTT TCTCTGTACA GCCCTGGCTG TCCTGGAACT CACTTTGTAG ACCAGGCTGG
  CCTCAAACTC AGAAATCCGC CTGTCTCTGC CTCCCAAGTG CTGGGATTAA AGGCGTGGGC
  CACCACCACT CGGCTGGATT CTAGCCTTAG AGTCAGTGTA ATGTTCTGGG GCTCGTGGTG
  GCCCGGAAAT ACAAGATCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135427382	ENSMUSSNP3547745	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52287957					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:84564080 () rs orientation: forward

Symbol	Name	Function Class
Gm37240	predicted gene, 37240	within coordinates
Rr68541	regulatory region 68541	680 bp distal
Rr68542	regulatory region 68542	1321 bp proximal