rs52290163 SNP Detail

Summary

• ID
  rs52290163
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160762900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGAGATG GCTTGGTGGC
  TAAGAGAACT TGCTACTTCT GCAGAGGACC CAGAGTTCTG AGTGCTCATA TAAGTCACTT
  AAAACCTTCT ACAGCCGGGC CGTGGTGGAG CACGCCTTTA ATCCCAGCAT TTGGGAGGCA
  GAGACAGGCA GATTTCTGAG TTCGAGGCCT GCCTGGTCTA CAGAGTGAGT TCCAGGACAG
  T
  CGGGGCTATA CAGAGAAACC CTGTCTCAAA AAACAAAACA AACAAAAAAC AAAAACAAAA
  CAAAACAAAA AAAACTCTTC TACAACTGTA TTTCCTAGAG ATCCAACACC AGCGTCTTGC
  TTCCTTGGAC ACTAGGCATG CTAATAGTGC ACTTTCTATG CATGGAGGCA AAACACTCAT
  ACAGATAAAA TAAATCAGTG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss145902334	ENSMUSSNP915708	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs52290163					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160762900 () rs orientation: forward

Symbol	Name	Function Class
Rc3h1	RING CCCH (C3H) domains 1	Intron
Rr421728	regulatory region 421728	1304 bp distal
Rr421729	regulatory region 421729	880 bp distal
Rr421730	regulatory region 421730	994 bp distal
Rr421731	regulatory region 421731	757 bp distal
Rr421732	regulatory region 421732	398 bp proximal