rs52290499 SNP Detail

Summary

• ID
  rs52290499
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31048547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATTCTAA ATAGCTCCCA
  ATCCCCTGTC TTCTTGTGTG TTATTACCAC AATTGCTGCT TCCTCTGGTC CACCCTTAAT
  GACTCCTGGA CCAGTGTAGT CTCCAGCATC TTCTAGCTCA TAGAGTTTTA CATTTTACTT
  ATTTATTTAG CCCACTAGGG TGATTCACTC TCTCTCTCTC TCTCTCTCTC TCTCTGTGTG
  Y
  GCGCGCGCGC GCACGTGTGT GTGTGTGTGT GTGTGTGTGT GTATGTGTGT GTGTATGTGT
  GTGTGTGTAT GTATTTATGT ATGTATAGGC GTCTGCATGC CACAGGAGGG CATCTGATAC
  AGGATAGATG GTTATGAGCC ACCATGTGGA TGTTGGGAAT TGAATTCAGG ACTTTTGAAA
  GAGCAGTCAG TGCTCTTAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146399926	ENSMUSSNP3834309	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52290499					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31048547 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gpr107	G protein-coupled receptor 107			Intron
				Noncoding-Transcript-Variant
Rr554553	regulatory region 554553			1410 bp distal
Rr554554	regulatory region 554554			1715 bp proximal