rs52290673 SNP Detail

Summary

• ID
  rs52290673
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43814051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTCAGGA CAGAAATATG
  AATAGTAATT AAGGCATGAT AATATTACAC ACTGCCAATC AAAGATGAAC TCAAATTTTA
  TGAGTTGTTA CAATCACAAT CACGGCGGGT CACCAATGCA TGGCTCACAC CTTTTCTCTC
  TGCATATCTT CTTTCTCTCT GCCTGTCTTC TTCCTCTATT TCTCTCTCCA TATACTCCCA
  Y
  ACACAAAAAT AAAATGTCCA TGACCACTAC AATATTAGTC TATATGTTTG TTCAGTGCCA
  TTTCAGTAAA GATCCTACCA ATGTTTTCCA GTGGAGTATT ACAGACTATT TTCAAAATTT
  ACACACAAAG GCATAAATTT GCAAGAATAA ATAAGAAACT GTCTAAAAGA AAGTTTTTTA
  AAAAAACAAA AACCAAGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62740049	NES17341077	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	T	C	C	T	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52290673					SNP	C	C	C	T	C	T	C	C	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62740049	NES17341077	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43814051 () rs orientation: forward

Symbol	Name	Function Class
Mep1a	meprin 1 alpha	348 bp upstream
Rr339847	regulatory region 339847	1650 bp distal
Rr339848	regulatory region 339848	850 bp distal
Rr339849	regulatory region 339849	450 bp distal
Tssr148121	transcription start site region 148121	421 bp upstream
Tssr148122	transcription start site region 148122	354 bp upstream
Tssr148123	transcription start site region 148123	853 bp downstream
Tssr148124	transcription start site region 148124	1107 bp downstream
Tssr148125	transcription start site region 148125	1118 bp downstream
Tssr148126	transcription start site region 148126	1168 bp downstream