rs52290879 SNP Detail

Summary

• ID
  rs52290879
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153793593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCATTGGT TCCATGGTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTTTCT CCCCCATCCC TCCCTCCCTC CTTCCCTCCC
  Y
  TCCTCTTCTT CTCCTCCACA ATCCTCTATT TCTGACAAGT GGTACTGCCT TTCATTCTTG
  AGGTTTTAGG AAGTGGGTAG ACATGAAGGA GAAATGAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148011186	ENSMUSSNP2095227	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320566727	CHEV_2_153777409	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52290879					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153793593 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	Intron
Rr567759	regulatory region 567759	1191 bp proximal
Rr567760	regulatory region 567760	1399 bp proximal