rs52291500 SNP Detail

Summary

• ID
  rs52291500
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123261096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCCACATCT TAGGTTTTAG GGCAGTCAAG CCCCTAAATT
  CATAGCTGCT GCTTGATTTC AATGAAGACA AATAGTGAAA ACCAACTGCA AACTCTAAAA
  S
  TAGGTGTAAG GGGGGGAGAG GGAGGGATCT CGGTGGGAAA AGGGTCAGGG AGGAGAAGAG
  GGGAACATGA TCAAATATTG GGTGGGGAAA ACAGAACTGA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936887	NES16189342	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52291500					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936887	NES16189342	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123261096 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	1357 bp downstream
Tssr58809	transcription start site region 58809	720 bp downstream
Tssr58810	transcription start site region 58810	695 bp downstream
Tssr58811	transcription start site region 58811	606 bp downstream
Tssr63020	transcription start site region 63020	1633 bp upstream
Tssr63021	transcription start site region 63021	1555 bp upstream
Tssr63022	transcription start site region 63022	1516 bp upstream
Tssr63023	transcription start site region 63023	1461 bp upstream
Tssr63024	transcription start site region 63024	1363 bp upstream
Tssr63025	transcription start site region 63025	1331 bp upstream
Tssr63026	transcription start site region 63026	1310 bp upstream
Tssr63027	transcription start site region 63027	1272 bp upstream
Tssr63028	transcription start site region 63028	1247 bp upstream
Tssr63029	transcription start site region 63029	1219 bp upstream
Tssr63030	transcription start site region 63030	1163 bp upstream
Tssr63031	transcription start site region 63031	1133 bp upstream
Tssr63032	transcription start site region 63032	1102 bp upstream
Tssr63033	transcription start site region 63033	1088 bp upstream
Tssr63034	transcription start site region 63034	1062 bp upstream
Tssr63035	transcription start site region 63035	1047 bp upstream
Tssr63036	transcription start site region 63036	980 bp upstream
Tssr63037	transcription start site region 63037	947 bp upstream
Tssr63038	transcription start site region 63038	922 bp upstream
Tssr63039	transcription start site region 63039	854 bp upstream
Tssr63040	transcription start site region 63040	810 bp upstream
Tssr63041	transcription start site region 63041	763 bp upstream
Tssr63042	transcription start site region 63042	743 bp upstream
Tssr63043	transcription start site region 63043	726 bp upstream
Tssr63044	transcription start site region 63044	691 bp upstream
Tssr63045	transcription start site region 63045	611 bp upstream
Tssr63046	transcription start site region 63046	598 bp upstream
Tssr63047	transcription start site region 63047	577 bp upstream
Tssr63048	transcription start site region 63048	543 bp upstream
Tssr63049	transcription start site region 63049	519 bp upstream
Tssr63050	transcription start site region 63050	474 bp upstream
Tssr63051	transcription start site region 63051	452 bp upstream
Tssr63052	transcription start site region 63052	1050 bp downstream
Tssr63053	transcription start site region 63053	1160 bp downstream
Tssr63054	transcription start site region 63054	1327 bp downstream
Tssr63055	transcription start site region 63055	1354 bp downstream
Tssr63056	transcription start site region 63056	1395 bp downstream
Tssr63057	transcription start site region 63057	1428 bp downstream