rs52291638 SNP Detail

Summary

• ID
  rs52291638
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:112798066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TGAGCCCAGG TTAAAAAAAG AAAGAAGGAA AGAAAGAAAG
  AAAGAAAGAA AGAAAGAAAG AAAGAAAGAA AGAAAGAAAG AAAGAAAGGA AGGAAGGAAG
  R
  AAGGAAGAAA GGAAGAAAGA AAGGAAGAAA CCCAAAGAGA CCACCAGGAA CCACAACTCT
  GATGCAAGCC CATGAGAGTC TTTATTCAAG CCCGAGATTG G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss149087932	ENSMUSSNP6182543	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52291638					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:112798066 () rs orientation: forward

Symbol	Name	Function Class
Gm30529	predicted gene, 30529	within coordinates
Gm42865	predicted gene 42865	within coordinates
Rr617426	regulatory region 617426	1946 bp proximal