rs52291778 SNP Detail

Summary

• ID
  rs52291778
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143565927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G ATACATATGA TCCTTATCTT CACTGCCAAG TAAGCATTCA
  CACATGTGCA TATACACATG CACGCACACA TACACACACA CACACACGCA CACACACATG
  Y
  ATGCCTCACA TCCACACAAA TAAAAAGGCC AATTTCCTTC TCTAGAGTGT TATTTTGTAT
  TTCTAATTAC CTCAAAGGAT ATAATGAAGT TCTTCAAAAT C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136026664	ENSMUSSNP5877826	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52291778					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143565927 () rs orientation: forward

Symbol	Name	Function Class
Gm33925	predicted gene, 33925	within coordinates
Gm40160	predicted gene, 40160	1269 bp downstream