rs52292385 SNP Detail

Summary

• ID
  rs52292385
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128048142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATTCATT ATGTAGTCAT
  GGCTGGCCTC AATTTCATAA AAATCTACCT GCCTCTGCCA CCCAAGTGCT GAGACTAAAT
  TAATGCATGC GATACCAAGT CTGGCAAGAT AAAAGAAGTA TTTTTTTAAA GTAGTTTAAT
  CCGGGGGGGG CGGGGGGAGT GACACACAGC CCTCAGGAGG CAGAGGCAGG CAGTTTTCTA
  Y
  GAGTTCGAGG CCAGTCTGGT CTACATACCA AGTTCCAGGA CAGGCAGAGC ACCACACATT
  ATTTAAAAAA AAAAAAAAAA AAAAAGCGTA AATCCGTTTC CCAGAGCCTC AGCATTCTCT
  TTGGACAGAA TGTGTCTACA TTCAAGCTTA CTGTTCTGTC TTCTGAGACA GAGTTACTAT
  GTAACCTTTG CAGGCCTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147738243	ENSMUSSNP268161	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss323532325	CHEV_10_127649329	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52292385					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128048142 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	219 bp distal
Cpgi2388	CpG island 2388	806 bp proximal
Rr224447	regulatory region 224447	within coordinates
Rr224448	regulatory region 224448	458 bp proximal
Rr402345	regulatory region 402345	262 bp downstream
Rr402346	regulatory region 402346	531 bp upstream
Spryd4	SPRY domain containing 4	479 bp upstream
Tssr99849	transcription start site region 99849	498 bp upstream
Tssr99850	transcription start site region 99850	450 bp upstream