rs52293230 SNP Detail

Summary

• ID
  rs52293230
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94843507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TCTTTTGTTC AAAGTATTTT TTATTCTTTT TTTTTTTTTT
  TTTAATGGAT AGGGACTTGT GTGAATTGTT GGGGTTTTTT TTTTTTTTTT TTTTGGTTTT
  K
  TTTTTTTTTG TTTTGTTTTG TTTTTTTTCC TGAAGGTGCT ATTTAACAAG GGAGAAGAGA
  GTGCGGGGAC TTCACCCTGC CCACTCTCTA CTCTCTCTCC A                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132650930	ENSMUSSNP7107154	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52293230					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94843507 () rs orientation: forward

Symbol	Name	Function Class
Col1a1	collagen, type I, alpha 1	within coordinates
D11Lis1	DNA segment, Chr 11, Lisse 1	637 bp proximal
Gm74287	predicted gene, 74287	1570 bp downstream
Tssr3647	transcription start site region 3647	697 bp downstream
Tssr104272	transcription start site region 104272	1937 bp downstream
Tssr104273	transcription start site region 104273	1843 bp downstream
Tssr104274	transcription start site region 104274	1825 bp downstream
Tssr104275	transcription start site region 104275	1816 bp downstream
Tssr104276	transcription start site region 104276	1805 bp downstream
Tssr104277	transcription start site region 104277	1531 bp downstream
Tssr104278	transcription start site region 104278	1510 bp downstream
Tssr104279	transcription start site region 104279	1453 bp downstream
Tssr104280	transcription start site region 104280	1441 bp downstream
Tssr104281	transcription start site region 104281	1427 bp downstream
Tssr104282	transcription start site region 104282	1357 bp downstream
Tssr104283	transcription start site region 104283	1204 bp downstream
Tssr104284	transcription start site region 104284	1144 bp downstream
Tssr104285	transcription start site region 104285	1114 bp downstream
Tssr104286	transcription start site region 104286	1081 bp downstream
Tssr104287	transcription start site region 104287	1057 bp downstream
Tssr104288	transcription start site region 104288	1017 bp downstream
Tssr104289	transcription start site region 104289	1009 bp downstream
Tssr104290	transcription start site region 104290	961 bp downstream
Tssr104291	transcription start site region 104291	946 bp downstream
Tssr104292	transcription start site region 104292	849 bp downstream
Tssr104293	transcription start site region 104293	742 bp downstream
Tssr104294	transcription start site region 104294	708 bp downstream
Tssr104295	transcription start site region 104295	664 bp downstream
Tssr104296	transcription start site region 104296	640 bp downstream
Tssr104297	transcription start site region 104297	617 bp downstream
Tssr104298	transcription start site region 104298	583 bp downstream
Tssr104299	transcription start site region 104299	549 bp downstream
Tssr104300	transcription start site region 104300	529 bp downstream
Tssr104301	transcription start site region 104301	409 bp downstream
Tssr104302	transcription start site region 104302	395 bp downstream
Tssr104303	transcription start site region 104303	376 bp downstream
Tssr104304	transcription start site region 104304	334 bp downstream
Tssr104305	transcription start site region 104305	312 bp downstream
Tssr104306	transcription start site region 104306	297 bp downstream
Tssr104307	transcription start site region 104307	280 bp downstream
Tssr104308	transcription start site region 104308	207 bp downstream
Tssr104309	transcription start site region 104309	183 bp downstream
Tssr104310	transcription start site region 104310	97 bp downstream
Tssr104311	transcription start site region 104311	48 bp downstream
Tssr104312	transcription start site region 104312	6 bp upstream
Tssr104313	transcription start site region 104313	22 bp upstream
Tssr104314	transcription start site region 104314	438 bp upstream
Tssr110222	transcription start site region 110222	1783 bp upstream
Tssr110223	transcription start site region 110223	1424 bp upstream
Tssr110224	transcription start site region 110224	1360 bp upstream
Tssr110225	transcription start site region 110225	1144 bp upstream
Tssr110226	transcription start site region 110226	1104 bp upstream
Tssr110227	transcription start site region 110227	1091 bp upstream
Tssr110228	transcription start site region 110228	1031 bp upstream
Tssr110229	transcription start site region 110229	1011 bp upstream
Tssr110230	transcription start site region 110230	974 bp upstream