rs52294727 SNP Detail

Summary

• ID
  rs52294727
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:75138848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tagcctgag cctggtctat agagctagtt
  ccaggacagc cagggcaaca cagagaaacc ctgtctcaaa aaaacaaaCA ACAACAAAAC
  CAAAACAACA GAGGGACAAA GATAGacaca cacacacaca cacacacaca cacacacaca
  S
  agagagagag agagagagag agagagagag agagagagag agaagagaga gaCCCAGTGC
  TGAGAGGGGA GGAGGCTGGA GGGAAGACAG CTGACTTGAA TGAATGGACC TTCATTATTC
  CTTCAGCAAG GGTGGGTCCT AAGTGATGAC                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148683095	ENSMUSSNP5044496	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321571784	CHEV_5_75374212	CHEVERUD	SCREENING_POP	f	SNP		G	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52294727					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:75138848 () rs orientation: forward

Symbol	Name	Function Class
Rr613376	regulatory region 613376	1483 bp proximal
Tssr46681	transcription start site region 46681	1691 bp upstream